Package: birdscanR 0.3.0.9003

Birgen Haest

birdscanR: Migration Traffic Rate Calculation Package for 'Birdscan MR1' Radars

Extract data from 'Birdscan MR1' 'SQL' vertical-looking radar databases, filter, and process them to Migration Traffic Rates (#objects per hour and km) or density (#objects per km3) of, for example birds, and insects. Object classifications in the 'Birdscan MR1' databases are based on the dataset of Haest et al. (2021) <doi:10.5281/zenodo.5734960>). Migration Traffic Rates and densities can be calculated separately for different height bins (with a height resolution of choice) as well as over time periods of choice (e.g., 1/2 hour, 1 hour, 1 day, day/night, the full time period of observation, and anything in between). Two plotting functions are also included to explore the data in the 'SQL' databases and the resulting Migration Traffic Rate results. For details on the Migration Traffic Rate calculation procedures, see Schmid et al. (2019) <doi:10.1111/ecog.04025>.

Authors:Birgen Haest [aut, cre], Fabian Hertner [aut], Baptiste Schmid [ctb], Damiano Preatoni [ctb], Johannes De Groeve [ctb], Felix Liechti [ctb]

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birdscanR/json (API)
NEWS

# Install 'birdscanR' in R:
install.packages('birdscanR', repos = c('https://birdscancommunity.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/birdscancommunity/birdscanr/issues

Datasets:
  • classAbbreviations - Default class abbreviations table of the birdscanR package
  • manualBlindTimes - Example file on how to include manual blind times for your 'Birdscan MR1' database.

On CRAN:

4.86 score 3 stars 3 scripts 242 downloads 28 exports 56 dependencies

Last updated 19 days agofrom:5e8fc15072. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 18 2024
R-4.5-winWARNINGOct 18 2024
R-4.5-linuxWARNINGOct 18 2024
R-4.4-winWARNINGOct 18 2024
R-4.4-macWARNINGOct 18 2024
R-4.3-winWARNINGOct 18 2024
R-4.3-macWARNINGOct 18 2024

Exports:addDayNightInfoPerEchocomputeDensitycomputeMTRconvertTimeZoneextractDbDatafilterDatafilterEchoDatafilterProtocolDatagetBatClassificationgetCollectionTablegetEchoFeaturesgetEchoValidationTablegetManualVisibilityTablegetProtocolTablegetRadarTablegetRfClassificationgetSiteTablegetTimeBinsTablegetVisibilityTableloadManualBlindTimesmergeVisibilityAndManualBlindTimesplotExplorationplotLongitudinalMTRQUERYreclassToBatssaveMTRsavePlotToFiletwilight

Dependencies:classclassIntclicolorspacecpp11DBIdplyre1071fansifarvergenericsggplot2gluegtableisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmodimunsellnlmenormpillarpkgconfigplyrproxypurrrR6RColorBrewerRcppreshape2rlangRODBCRPostgreSQLrstudioapis2scalessfspstringistringrsuntoolstibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwk

How to calculate Activity/Migration Traffic Rates

Birgen Haest, [email protected]; Fabian Hertner, [email protected]

Rendered frommtrCalculationWorkflow.Rmdusingknitr::rmarkdownon Oct 18 2024.

Last update: 2023-02-16
Started: 2022-10-25